Uses of Class
data.TreeNode

Packages that use TreeNode
core   
data   
data.exporters   
 

Uses of TreeNode in core
 

Fields in core declared as TreeNode
 TreeNode Tree.root
          Root node of the tree
 

Methods in core that return TreeNode
private  TreeNode Tree.recursiveTree(Context con)
          Recursive method to populate tree
 

Uses of TreeNode in data
 

Fields in data declared as TreeNode
 TreeNode TreeNode.negBrench
          Pointer to the negative result brench
 TreeNode TreeNode.posBrench
          Pointer to the positive result brench
 

Uses of TreeNode in data.exporters
 

Methods in data.exporters with parameters of type TreeNode
private static java.lang.String ExporterDOT.getNodeId(TreeNode tn)
          Returns the Strign used to identify a node in tree.
private static java.lang.String ExporterDOT.getNodeLine(TreeNode tn, Matrix m, boolean isTaxa)
          Returns the String of a node line of the tree
private static void ExporterDOT.writeDOT(TreeNode t, Matrix mat, java.io.OutputStreamWriter out)
          Writes recursively all the tree nodes
private static void ExporterTreeML.writeTreeML(TreeNode t, int level, Matrix mat, java.io.OutputStreamWriter out)
          Writes recursively all the tree nodes
private static void ExporterXML.writeXML(TreeNode t, int level, Matrix mat, java.io.OutputStreamWriter out)
          Writes recursively all the tree nodes