Serialized Form
serialVersionUID: 1L
serialVersionUID: 1L
ZeroSkipValue
float ZeroSkipValue
- To avoid lose information, change 0.00f prob. for this value
minUnexpectedScore
float minUnexpectedScore
- Minimum score to show the taxon at the unexpected results list
SignalScoreLimitUpp
float SignalScoreLimitUpp
- When determining if a test is positive, negative or variable,
there are two cut points. That point is the limit beetween
Positive and Variable results.
SignalScoreLimitLow
float SignalScoreLimitLow
- When determining if a test positive, negative or variable,
there are two cut points. That point is the limit beetween
Variable and Negative results.
foundValue
float foundValue
- Minimum value to fire the Identified panel
bestScoredCount
int bestScoredCount
- This number indicates the number of taxa that has to be considered
on the best scored taxa list and unexpected list
serialVersionUID: 2L
Class data.Matrix extends java.lang.Object implements Serializable |
serialVersionUID: 1L
name
java.lang.String name
- Matrix name (id of the Matrix)
info
java.lang.String info
- General Text info about matrix entered by user
test_names
java.lang.String[] test_names
- Names of the tests on the matrix
taxa_names
java.lang.String[] taxa_names
- Names of the taxa on the matrix
importDate
java.util.Date importDate
- Timestamp of the import moment
prob_test_taxa
float[][] prob_test_taxa
- Matrix[x][y] with the probability (normalized from 0 to 1 about taxa "y"
gives a positive on test "x"
serialVersionUID: 1L
name
java.lang.String name
- The name (identification) of the Workspace.
info
java.lang.String info
- The information about the workspace.
dateCreated
java.util.Date dateCreated
- Creation date
nameRefMatrix
java.lang.String nameRefMatrix
- The name (identification) of the reference Matrix.
test_res
int[] test_res
- Mantains at the pos "i" the results of the test "i"
config
Configuration config
- The Workspace config
serialVersionUID: 2L
Class gui.MainBar extends javax.swing.JMenuBar implements Serializable |
serialVersionUID: 1L
ws
Workspace ws
pl
PanelLibrary pl
wsm
WorkspaceManager wsm
mFile
javax.swing.JMenu mFile
miNew
javax.swing.JMenuItem miNew
miLoad
javax.swing.JMenuItem miLoad
miSave
javax.swing.JMenuItem miSave
miImport
javax.swing.JMenuItem miImport
miLibrary
javax.swing.JMenuItem miLibrary
miViewLog
javax.swing.JMenuItem miViewLog
miExportLog
javax.swing.JMenuItem miExportLog
miClose
javax.swing.JMenuItem miClose
miExit
javax.swing.JMenuItem miExit
mHelp
javax.swing.JMenu mHelp
miGoWebsite
javax.swing.JMenuItem miGoWebsite
miCheckUpdates
javax.swing.JMenuItem miCheckUpdates
miAbout
javax.swing.JMenuItem miAbout
Class gui.MainFrame extends javax.swing.JFrame implements Serializable |
serialVersionUID: 1L
mainBar
MainBar mainBar
panelWelcome
PanelWelcome panelWelcome
serialVersionUID: 1L
buttonRestore
javax.swing.JButton buttonRestore
buttonNew
javax.swing.JButton buttonNew
buttonLibrary
javax.swing.JButton buttonLibrary
labelTitle
javax.swing.JLabel labelTitle
labelIntro
javax.swing.JLabel labelIntro
Package gui.matrixLibrary |
serialVersionUID: 1L
ref_mat
Matrix ref_mat
exit_code
int exit_code
pmi
PanelMatrixInfo pmi
serialVersionUID: 1L
treeComponent
javax.swing.JComponent treeComponent
treeView
TreeView treeView
idTree
Tree idTree
serialVersionUID: 1L
listMatrix
JListMatrix listMatrix
scrollMatrix
javax.swing.JScrollPane scrollMatrix
panelInfo
PanelMatrixInfo panelInfo
panelList
javax.swing.JPanel panelList
panelButtons
javax.swing.JPanel panelButtons
buttonReturn
javax.swing.JButton buttonReturn
buttonViewTree
javax.swing.JButton buttonViewTree
buttonImport
javax.swing.JButton buttonImport
buttonExport
javax.swing.JButton buttonExport
buttonDelete
javax.swing.JButton buttonDelete
currentIndex
int currentIndex
serialVersionUID: 1L
serialVersionUID: 1L
serialVersionUID: 1L
button
javax.swing.JRadioButton button
serialVersionUID: 1L
serialVersionUID: 1L
serialVersionUID: 1L
rowColors
java.awt.Color[] rowColors
drawStripes
boolean drawStripes
wrapper
JListMatrix.RendererWrapper wrapper
serialVersionUID: 1L
rowColors
java.awt.Color[] rowColors
drawStripes
boolean drawStripes
wrapper
JListWorkspace.RendererWrapper wrapper
serialVersionUID: 1L
backgroundImage
java.awt.Image backgroundImage
serialVersionUID: 1L
testIndex
int testIndex
testResult
int testResult
serialVersionUID: 1L
rowColors
java.awt.Color[] rowColors
drawStripes
boolean drawStripes
serialVersionUID: 1L
serialVersionUID: 1L
readOnly
boolean readOnly
nonEditRows
java.util.Vector<E> nonEditRows
serialVersionUID: 1L
choosenDir
java.lang.String choosenDir
exit_code
int exit_code
textPath
javax.swing.JTextField textPath
buttonChoose
javax.swing.JButton buttonChoose
buttonOk
javax.swing.JButton buttonOk
buttonExit
javax.swing.JButton buttonExit
serialVersionUID: 1L
refMat
Matrix refMat
pmi
PanelMatrixInfo pmi
serialVersionUID: 1L
exit_code
int exit_code
config
Configuration config
pc
PanelConfig pc
buttonOk
javax.swing.JButton buttonOk
serialVersionUID: 1L
jta
javax.swing.JTextArea jta
jsp
javax.swing.JScrollPane jsp
buttonClose
javax.swing.JButton buttonClose
serialVersionUID: 1L
config
Configuration config
labelVarRes1
javax.swing.JLabel labelVarRes1
formattedHigh
javax.swing.JFormattedTextField formattedHigh
labelVarRes2
javax.swing.JLabel labelVarRes2
formattedLow
javax.swing.JFormattedTextField formattedLow
labelFound
javax.swing.JLabel labelFound
formattedFound
javax.swing.JFormattedTextField formattedFound
serialVersionUID: 1L
ref_mat
Matrix ref_mat
overwriteRisk
boolean overwriteRisk
textName
javax.swing.JTextField textName
labelName
javax.swing.JLabel labelName
labelOverwite
javax.swing.JLabel labelOverwite
textareaDesc
javax.swing.JTextArea textareaDesc
labelDesc
javax.swing.JLabel labelDesc
scrollDesc
javax.swing.JScrollPane scrollDesc
panelData
javax.swing.JPanel panelData
listTest
javax.swing.JList listTest
scrollTest
javax.swing.JScrollPane scrollTest
listTaxa
javax.swing.JList listTaxa
scrollTaxa
javax.swing.JScrollPane scrollTaxa
labelTaxa
javax.swing.JLabel labelTaxa
labelTest
javax.swing.JLabel labelTest
labelImport
javax.swing.JLabel labelImport
buttonCancel
javax.swing.JButton buttonCancel
buttonConfirm
javax.swing.JButton buttonConfirm
textInspector
javax.swing.JTextField textInspector
labelInspector
javax.swing.JLabel labelInspector
serialVersionUID: 1L
exit_code
int exit_code
choosenMatrix
java.lang.String choosenMatrix
config
Configuration config
pws
PanelWSCreate pws
serialVersionUID: 1L
labelMatrix
javax.swing.JLabel labelMatrix
listMatrix
JListMatrix listMatrix
scrollMatrix
javax.swing.JScrollPane scrollMatrix
textId
javax.swing.JTextField textId
labelId
javax.swing.JLabel labelId
textareaDesc
javax.swing.JTextArea textareaDesc
labelDesc
javax.swing.JLabel labelDesc
scrollDesc
javax.swing.JScrollPane scrollDesc
buttonSettings
javax.swing.JButton buttonSettings
panelExtended
javax.swing.JPanel panelExtended
panelConfig
PanelConfig panelConfig
buttonMatrix
javax.swing.JButton buttonMatrix
buttonAccept
javax.swing.JButton buttonAccept
choosenMatrix
java.lang.String choosenMatrix
serialVersionUID: 1L
parent
java.awt.Container parent
tableRes
JTableRadioButtons tableRes
scrollTable
javax.swing.JScrollPane scrollTable
rbt
JRadioButtonTest[][] rbt
btg
javax.swing.ButtonGroup[] btg
clearButton
javax.swing.JButton clearButton
serialVersionUID: 1L
wsMan
WorkspaceManager wsMan
panelInfo
PanelWSShowInfo panelInfo
panelResults
PanelWSEnterResults panelResults
panelFound
PanelWSTaxaFound panelFound
isFoundOnce
boolean isFoundOnce
serialVersionUID: 1L
listenerList
javax.swing.event.EventListenerList listenerList
tableTaxa
JTableTransparentBg tableTaxa
tableTest
JTableTransparentBg tableTest
separator
javax.swing.JSeparator separator
groupButton
javax.swing.ButtonGroup groupButton
rbAllVsAll
javax.swing.JRadioButton rbAllVsAll
rbBestVsAll
javax.swing.JRadioButton rbBestVsAll
buttonSummary
javax.swing.JButton buttonSummary
panelTaxa
javax.swing.JPanel panelTaxa
panelTest
javax.swing.JPanel panelTest
taxaColumnNames
java.lang.String[] taxaColumnNames
testColumnNames
java.lang.String[] testColumnNames
useAllVsAll
boolean useAllVsAll
serialVersionUID: 1L
parent
java.awt.Container parent
labelImg
javax.swing.JLabel labelImg
labelIntroName
javax.swing.JLabel labelIntroName
labelName
javax.swing.JLabel labelName
labelIntroProb
javax.swing.JLabel labelIntroProb
labelProb
javax.swing.JLabel labelProb
buttonExport
javax.swing.JButton buttonExport
buttonLog
javax.swing.JButton buttonLog
buttonBack
javax.swing.JButton buttonBack
buttonContinue
javax.swing.JButton buttonContinue
serialVersionUID: 1L
exit_code
int exit_code
listWS
JListWorkspace listWS
scrollList
javax.swing.JScrollPane scrollList
panelList
javax.swing.JPanel panelList
panelButtons
javax.swing.JPanel panelButtons
buttonLoad
javax.swing.JButton buttonLoad
buttonDelete
javax.swing.JButton buttonDelete
currentIndex
int currentIndex
wsName
java.lang.String wsName