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safeCheck()
- Static method in class gui.
GuiManager
save(Container, Workspace)
- Static method in class gui.workSpace.
WorkspaceSaver
That function generates the dialog needed to prompt information about the place to export and calls a lower layer class to do that
saveMatrix(Matrix, String)
- Static method in class data.
SerialManager
Saves a matrix object with the given name
saveObject(Object, String, String, String)
- Static method in class data.
SerialManager
Saves any object in disk.
saveProps()
- Static method in class data.
PropsManager
Saves the current Properties
saveWorkspace(Workspace, String)
- Static method in class data.
SerialManager
Saves a Workspace object with the given name
scrollDesc
- Variable in class gui.myWindows.
PanelMatrixInfo
scrollDesc
- Variable in class gui.workSpace.
PanelWSCreate
scrollList
- Variable in class gui.workSpace.
WorkspaceLoader
scrollMatrix
- Variable in class gui.matrixLibrary.
PanelLibrary
scrollMatrix
- Variable in class gui.workSpace.
PanelWSCreate
scrollTable
- Variable in class gui.workSpace.
PanelWSEnterResults
scrollTaxa
- Variable in class gui.myWindows.
PanelMatrixInfo
scrollTest
- Variable in class gui.myWindows.
PanelMatrixInfo
secondValue
- Variable in class data.
IndexedItem
Additional Float value
sendMessage(String)
- Static method in class gui.myClasses.
MessageCenter
separator
- Variable in class gui.workSpace.
PanelWSShowInfo
SerialManager
- Class in
data
Low layer class to interact with the data in disk
SerialManager()
- Constructor for class data.
SerialManager
SerialManager.MyFilter
- Class in
data
It allows to create a custom FilenameFilter in an easy way
SerialManager.MyFilter(String)
- Constructor for class data.
SerialManager.MyFilter
Constructs a FilenameFilter that accepts files with the desired extension
serialVersionUID
- Static variable in exception core.
CoreException
serialVersionUID
- Static variable in class data.
Configuration
serialVersionUID
- Static variable in exception data.
DataException
serialVersionUID
- Static variable in class data.
Matrix
serialVersionUID
- Static variable in class data.
Workspace
serialVersionUID
- Static variable in exception gui.
GuiException
serialVersionUID
- Static variable in class gui.
MainBar
serialVersionUID
- Static variable in class gui.
MainFrame
serialVersionUID
- Static variable in class gui.matrixLibrary.
DialogMatrixImport
serialVersionUID
- Static variable in class gui.matrixLibrary.
DialogTree.MenuTree
serialVersionUID
- Static variable in class gui.matrixLibrary.
DialogTree
serialVersionUID
- Static variable in class gui.matrixLibrary.
PanelLibrary
serialVersionUID
- Static variable in class gui.matrixLibrary.
PanelTree
serialVersionUID
- Static variable in class gui.matrixLibrary.
TreeManager
serialVersionUID
- Static variable in class gui.matrixLibrary.
TreeView
serialVersionUID
- Static variable in class gui.myClasses.
CellEditorRadioButton
serialVersionUID
- Static variable in class gui.myClasses.
EventDoneTest
serialVersionUID
- Static variable in class gui.myClasses.
EventTaxaFound
serialVersionUID
- Static variable in class gui.myClasses.
JListMatrix
serialVersionUID
- Static variable in class gui.myClasses.
JListWorkspace
serialVersionUID
- Static variable in class gui.myClasses.
JPanelBackground
serialVersionUID
- Static variable in class gui.myClasses.
JRadioButtonTest
serialVersionUID
- Static variable in class gui.myClasses.
JTableRadioButtons
serialVersionUID
- Static variable in class gui.myClasses.
JTableTransparentBg
serialVersionUID
- Static variable in class gui.myClasses.
NonEditTableModel
serialVersionUID
- Static variable in class gui.myWindows.
DialogFirstRun
serialVersionUID
- Static variable in class gui.myWindows.
DialogMatrixInfo
serialVersionUID
- Static variable in class gui.myWindows.
DialogSetConfig
serialVersionUID
- Static variable in class gui.myWindows.
DialogTextArea
serialVersionUID
- Static variable in class gui.myWindows.
PanelConfig
serialVersionUID
- Static variable in class gui.myWindows.
PanelMatrixInfo
serialVersionUID
- Static variable in class gui.
PanelWelcome
serialVersionUID
- Static variable in class gui.workSpace.
DialogWSCreate
serialVersionUID
- Static variable in class gui.workSpace.
PanelWSCreate
serialVersionUID
- Static variable in class gui.workSpace.
PanelWSEnterResults
serialVersionUID
- Static variable in class gui.workSpace.
PanelWSMain
serialVersionUID
- Static variable in class gui.workSpace.
PanelWSShowInfo
serialVersionUID
- Static variable in class gui.workSpace.
PanelWSTaxaFound
serialVersionUID
- Static variable in class gui.workSpace.
WorkspaceLoader
setBestScoredCount(int)
- Method in class data.
Configuration
setFoundValue(float)
- Method in class data.
Configuration
setMinUnexpectedScore(float)
- Method in class data.
Configuration
setProp(String, String)
- Static method in class data.
PropsManager
Sets a key with a value in the Props.
setReadOnly(boolean)
- Method in class gui.myClasses.
NonEditTableModel
Sets all the columns of the table as non-editable (read-only table)
setSignalScoreLimitLow(float)
- Method in class data.
Configuration
setSignalScoreLimitUpp(float)
- Method in class data.
Configuration
setUnsavedChanges(boolean)
- Static method in class gui.
GuiManager
setUp(String)
- Method in class gui.myWindows.
DialogMatrixInfo
setUp(boolean)
- Method in class gui.myWindows.
DialogSetConfig
setUpBayesDefaults()
- Method in class data.
Configuration
Set the current Configuration to use Bayesian Id. defaults
setUpTreeDefaults()
- Method in class data.
Configuration
Set the current Configuration to use Tree Id. defaults
setZeroSkipValue(float)
- Method in class data.
Configuration
SHOW_ITEM_LIMIT
- Static variable in class gui.workSpace.
PanelWSShowInfo
showAbout()
- Method in class gui.
MainBar
showFileChooseSave(String[], String)
- Static method in class utils.
FileUtils
Shows a JFileChooser and let the user choose one of the formats passed to the function.
showLibrary()
- Static method in class gui.
GuiManager
showLoadDialog()
- Static method in class gui.workSpace.
WorkspaceLoader
showLoadWorkspace()
- Static method in class gui.
GuiManager
showLog()
- Method in class gui.workSpace.
WorkspaceManager
showNewWorkspace()
- Static method in class gui.
GuiManager
showWelcome()
- Static method in class gui.
GuiManager
SignalScoreLimitLow
- Variable in class data.
Configuration
When determining if a test positive, negative or variable, there are two cut points.
SignalScoreLimitUpp
- Variable in class data.
Configuration
When determining if a test is positive, negative or variable, there are two cut points.
sortedIndexes(float[])
- Static method in class utils.
ArrayUtils
Return the sorted list of the array indexes ordened by the value they point.
sortTaxaByProb()
- Method in class data.
Context
Returns the ordered array by descendent probabilities (higest probabilities at the lower array indexes)
sortTestByVal(int[])
- Method in class data.
Context
Given a set of test indexes return the same set sorted by the goodness of the test
splitContex(int, Matrix, Configuration)
- Method in class data.
Context
Separates the current context in two others, discriminating one from each other using their estimation on the test result with especified identificator
startListen()
- Method in class gui.matrixLibrary.
PanelLibrary
stateChanged(ChangeEvent)
- Method in class gui.workSpace.
PanelWSMain
stateChanged(ChangeEvent)
- Method in class gui.workSpace.
WorkspaceManager
stopListen()
- Method in class gui.matrixLibrary.
PanelLibrary
sum
- Variable in class core.
Identifier
Mantains the sum of all probabilities
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