A B C D E F G H I J K L M N O P R S T U V W Z

R

rbAllVsAll - Variable in class gui.workSpace.PanelWSShowInfo
 
rbBestVsAll - Variable in class gui.workSpace.PanelWSShowInfo
 
rbt - Variable in class gui.workSpace.PanelWSEnterResults
 
readOnly - Variable in class gui.myClasses.NonEditTableModel
 
recalculateAll() - Method in class gui.workSpace.WorkspaceManager
Recalculates all the context
recursiveTree(Context) - Method in class core.Tree
Recursive method to populate tree
ref - Static variable in class data.PropsManager
Reference of standalone class
ref - Static variable in class gui.GuiManager
 
ref - Static variable in class gui.MainFrame
 
ref - Static variable in class gui.myClasses.MessageCenter
 
ref_mat - Variable in class gui.matrixLibrary.DialogMatrixImport
 
ref_mat - Variable in class gui.myWindows.PanelMatrixInfo
 
refMat - Variable in class gui.myWindows.DialogMatrixInfo
 
refMat - Variable in class gui.workSpace.WorkspaceManager
 
refresh() - Method in class gui.myClasses.JListMatrix
 
refresh() - Method in class gui.myClasses.JListWorkspace
 
removeDoneTestListener(DoneTestListener) - Method in class gui.workSpace.WorkspaceManager
 
removeListener(MessageListener) - Static method in class gui.myClasses.MessageCenter
 
removeMessageListener(MessageListener) - Method in class gui.myClasses.MessageCenter
 
removeProp(String) - Static method in class data.PropsManager
Removes a property from the current loaded instance
removeTaxaFoundListener(TaxaFoundListener) - Method in class gui.workSpace.PanelWSShowInfo
 
removeUpdate(DocumentEvent) - Method in class gui.matrixLibrary.PanelLibrary
 
removeUpdate(DocumentEvent) - Method in class gui.myWindows.PanelMatrixInfo
 
ren - Variable in class gui.myClasses.JListMatrix.RendererWrapper
 
ren - Variable in class gui.myClasses.JListWorkspace.RendererWrapper
 
RendererRadioButton - Class in gui.myClasses
Custom TableCellRenderer ready to handle RadioButtons in the Table
RendererRadioButton() - Constructor for class gui.myClasses.RendererRadioButton
 
replaceVars(WorkspaceManager, File) - Static method in class data.exporters.ExporterTXT
Given the template file and the WorkspaceManager, this method replaces the variables in the template with his concrete values for the WorspaceManager
resetGuiChanges() - Static method in class gui.GuiManager
 
root - Variable in class core.Tree
Root node of the tree
rowColors - Variable in class gui.myClasses.JListMatrix
 
rowColors - Variable in class gui.myClasses.JListWorkspace
 
rowColors - Variable in class gui.myClasses.JTableRadioButtons
 
run(int, int) - Method in class core.Bayes
This method update the current identification state with the supplied result for the test
run() - Method in class core.Tree
Populates the tree nodes with test and taxa, updating every node.
run(Container) - Static method in class gui.matrixLibrary.ImportMatrixManager
That function generates from begining to the end all the screens needed to prompt information about the matrix to import and serializes it using lower layer classes.
run(double) - Method in class gui.matrixLibrary.TreeView.AutoPanAction
 

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