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generateData(Matrix, int[])
- Method in class gui.workSpace.
PanelWSEnterResults
getAllFilenameFilter()
- Static method in class data.importers.
Importer
getBestScoredCount()
- Method in class data.
Configuration
getBestTaxaIndex()
- Method in class core.
Identifier
Returns the index of the taxon with the higher relative probability
getBestTaxaIndex()
- Method in class data.
Context
Returns the taxon with the best probability (any of them, in case of tie)
getBestTestIndex()
- Method in class core.
Identifier
Returns the key of the test with best value (all taxa vs. all others).
getBestTestIndex(Context)
- Method in class core.
Identifier
Returns the key of the test with best value (all taxa vs. all others).
getBestTestIndex(int)
- Method in class core.
Identifier
Returns the key of the test with best value (one taxon vs. all others).
getBestTestIndex(int, Context)
- Method in class core.
Identifier
Returns the key of the test with best value (one taxon vs. all others).
getCellEditorValue()
- Method in class gui.myClasses.
CellEditorRadioButton
getCellRenderer()
- Method in class gui.myClasses.
JListMatrix
Return the wrapped cell renderer.
getCellRenderer()
- Method in class gui.myClasses.
JListWorkspace
Return the wrapped cell renderer.
getCharset(File)
- Static method in class utils.
FileUtils
Naive charset autodetector.
getChoosenMatrix()
- Method in class gui.workSpace.
DialogWSCreate
getColor(VisualItem)
- Method in class gui.matrixLibrary.
TreeView.NodeColorAction
getConfig()
- Method in class gui.myWindows.
PanelConfig
getConfig()
- Method in class gui.workSpace.
DialogWSCreate
getDefaultName()
- Static method in class data.
Workspace
Generates a default name for a new Workspace using a timestamp
getDescription()
- Method in class data.importers.
ImporterCSV.MatrixFileFilterCSV
getDescription()
- Method in class data.importers.
ImporterIMAT.MatrixFileFilterIMAT
getDescription()
- Method in class data.importers.
ImporterMAT.MatrixFileFilterMAT
getDescription()
- Method in class data.importers.
ImporterXLS.MatrixFileFilterXLS
getExtension(File)
- Static method in class utils.
FileUtils
Returns the extension (last string after the ".") of a file
getFileFilter(String, String)
- Static method in class utils.
FileUtils
Returns a custom FileFilter that accepts the files with the given extension
getFileNames(String, String)
- Static method in class data.
SerialManager
Return the names of the files with the given extension in the given path
getFoundValue()
- Method in class data.
Configuration
getFreeName(String)
- Static method in class data.importers.
Importer
Finds a free name (identificator) for the matrix
getImage(String)
- Static method in class utils.
FileUtils
Returns an image inside "img" folder
getIncoValues(Matrix, Configuration)
- Method in class data.
Context
Return the set of done tests that give an unexpected result for the best taxon founded till this moment A test is unexpected only if it has non-variable probabilities and signal opposite results have been supplied
getInstance()
- Static method in class data.
PropsManager
Return the singleton instance of this class
getInstance()
- Static method in class gui.
GuiManager
getInstance()
- Static method in class gui.
MainFrame
getInstance()
- Static method in class gui.myClasses.
MessageCenter
getListCellRendererComponent(JList, Object, int, boolean, boolean)
- Method in class gui.myClasses.
JListMatrix.RendererWrapper
getListCellRendererComponent(JList, Object, int, boolean, boolean)
- Method in class gui.myClasses.
JListWorkspace.RendererWrapper
getMainBar()
- Static method in class gui.
MainFrame
getMainPanel()
- Static method in class gui.
MainFrame
getMatrixInfo()
- Method in class gui.matrixLibrary.
DialogMatrixImport
getMatrixName()
- Method in class gui.matrixLibrary.
DialogMatrixImport
getMatrixNames()
- Static method in class data.
SerialManager
Retun the names of all Matrix in the Library
getMinAliveScore()
- Method in class data.
Configuration
getNameNoExtension(File)
- Static method in class utils.
FileUtils
Returns the name (the string before the ".") of a file
getNodeId(TreeNode)
- Static method in class data.exporters.
ExporterDOT
Returns the Strign used to identify a node in tree.
getNodeLine(TreeNode, Matrix, boolean)
- Static method in class data.exporters.
ExporterDOT
Returns the String of a node line of the tree
getProp(String)
- Static method in class data.
PropsManager
Gets the property in the current file
getScrollableTracksViewportHeight()
- Method in class gui.myClasses.
JTableRadioButtons
getSignalScoreLimitLow()
- Method in class data.
Configuration
getSignalScoreLimitUpp()
- Method in class data.
Configuration
getTableCellEditorComponent(JTable, Object, boolean, int, int)
- Method in class gui.myClasses.
CellEditorRadioButton
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int)
- Method in class gui.myClasses.
RendererRadioButton
getTaxaIndex()
- Method in class core.
Identifier
Returns an ordered array (sorted from best to worse) with the index of all alive taxa (the ones which till this moment haven't been discarded)
getTestIndex()
- Method in class core.
Identifier
Returns an ordered array (sorted from best to worse) with the index of each missed test in order to choose the best one.
getTestIndex(Context)
- Method in class core.
Identifier
Returns an ordered array (sorted from best to worse) with the index of each missed test in order to choose the best one.
getTestIndex(int)
- Method in class core.
Identifier
Returns an ordered array (sorted from best to worse) with the index of each missed test in order to choose the best one.
getTestIndex(int, Context)
- Method in class core.
Identifier
Returns an ordered array (sorted from best to worse) with the index of each missed test in order to choose the best one.
getTestIndex()
- Method in class gui.myClasses.
JRadioButtonTest
getTestResult()
- Method in class gui.myClasses.
JRadioButtonTest
getTXT(WorkspaceManager)
- Static method in class data.exporters.
ExporterTXT
Generates the report.
getVersion()
- Static method in class gui.
MainFrame
getWorkspaceNames()
- Static method in class data.
SerialManager
Retun the names of all Workspace saved
getWSInfo()
- Method in class gui.workSpace.
DialogWSCreate
getWSName()
- Method in class gui.workSpace.
DialogWSCreate
getZeroSkipValue()
- Method in class data.
Configuration
groupButton
- Variable in class gui.workSpace.
PanelWSShowInfo
gui
- package gui
gui.matrixLibrary
- package gui.matrixLibrary
gui.myClasses
- package gui.myClasses
gui.myWindows
- package gui.myWindows
gui.workSpace
- package gui.workSpace
GuiException
- Exception in
gui
Exception throwed by user interface layer
GuiException()
- Constructor for exception gui.
GuiException
GuiException(String)
- Constructor for exception gui.
GuiException
GuiException(Throwable)
- Constructor for exception gui.
GuiException
GuiException(String, Throwable)
- Constructor for exception gui.
GuiException
GuiManager
- Class in
gui
Singleton class
GuiManager()
- Constructor for class gui.
GuiManager
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