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P

paintComponent(Graphics) - Method in class gui.myClasses.JListMatrix
Add zebra stripes to the background.
paintComponent(Graphics) - Method in class gui.myClasses.JListWorkspace
Add zebra stripes to the background.
paintComponent(Graphics) - Method in class gui.myClasses.JPanelBackground
 
paintComponent(Graphics) - Method in class gui.myClasses.JTableRadioButtons
 
panelButtons - Variable in class gui.matrixLibrary.PanelLibrary
 
panelButtons - Variable in class gui.workSpace.WorkspaceLoader
 
PanelConfig - Class in gui.myWindows
 
PanelConfig(Configuration, boolean) - Constructor for class gui.myWindows.PanelConfig
 
panelConfig - Variable in class gui.workSpace.PanelWSCreate
 
panelData - Variable in class gui.myWindows.PanelMatrixInfo
 
panelExtended - Variable in class gui.workSpace.PanelWSCreate
 
panelFound - Variable in class gui.workSpace.PanelWSMain
 
panelInfo - Variable in class gui.matrixLibrary.PanelLibrary
 
panelInfo - Variable in class gui.workSpace.PanelWSMain
 
PanelLibrary - Class in gui.matrixLibrary
 
PanelLibrary() - Constructor for class gui.matrixLibrary.PanelLibrary
 
panelList - Variable in class gui.matrixLibrary.PanelLibrary
 
panelList - Variable in class gui.workSpace.WorkspaceLoader
 
PanelMatrixInfo - Class in gui.myWindows
 
PanelMatrixInfo(Matrix, boolean) - Constructor for class gui.myWindows.PanelMatrixInfo
 
panelResults - Variable in class gui.workSpace.PanelWSMain
 
panelTaxa - Variable in class gui.workSpace.PanelWSShowInfo
 
panelTest - Variable in class gui.workSpace.PanelWSShowInfo
 
PanelTree - Class in gui.matrixLibrary
 
PanelTree(TreeView) - Constructor for class gui.matrixLibrary.PanelTree
 
panelWelcome - Variable in class gui.MainFrame
 
PanelWelcome - Class in gui
 
PanelWelcome() - Constructor for class gui.PanelWelcome
 
PanelWSCreate - Class in gui.workSpace
 
PanelWSCreate(Configuration) - Constructor for class gui.workSpace.PanelWSCreate
 
PanelWSEnterResults - Class in gui.workSpace
 
PanelWSEnterResults(Container, Matrix, int[]) - Constructor for class gui.workSpace.PanelWSEnterResults
 
PanelWSMain - Class in gui.workSpace
 
PanelWSMain(Workspace) - Constructor for class gui.workSpace.PanelWSMain
 
PanelWSShowInfo - Class in gui.workSpace
 
PanelWSShowInfo() - Constructor for class gui.workSpace.PanelWSShowInfo
 
PanelWSTaxaFound - Class in gui.workSpace
 
PanelWSTaxaFound(Container, String, float) - Constructor for class gui.workSpace.PanelWSTaxaFound
 
parent - Variable in class gui.matrixLibrary.DialogTree.MenuTree
 
parent - Variable in class gui.workSpace.PanelWSEnterResults
 
parent - Variable in class gui.workSpace.PanelWSTaxaFound
 
PATH_MATRIX - Static variable in class data.SerialManager
Path to the matrix folder (where they will be saved)
PATH_WORKSPACE - Static variable in class data.SerialManager
Path to the workspace folder (where they will be saved)
pc - Variable in class gui.myWindows.DialogSetConfig
 
pl - Variable in class gui.MainBar
 
pmi - Variable in class gui.matrixLibrary.DialogMatrixImport
 
pmi - Variable in class gui.myWindows.DialogMatrixInfo
 
posBrench - Variable in class data.TreeNode
Pointer to the positive result brench
prepareEditor(TableCellEditor, int, int) - Method in class gui.myClasses.JTableRadioButtons
 
prepareRenderer(TableCellRenderer, int, int) - Method in class gui.myClasses.JTableRadioButtons
 
prepareRenderer(TableCellRenderer, int, int) - Method in class gui.myClasses.JTableTransparentBg
 
printException(Exception, String, String) - Static method in class gui.MainFrame
 
prob_test_taxa - Variable in class data.Matrix
Matrix[x][y] with the probability (normalized from 0 to 1 about taxa "y" gives a positive on test "x"
props - Variable in class data.PropsManager
Instance of properties we will use
PropsManager - Class in data
Singleton class that allows save and retrieve properties
PropsManager() - Constructor for class data.PropsManager
Singleton class.
propsPath - Static variable in class data.PropsManager
File wich contain the properties.
pws - Variable in class gui.workSpace.DialogWSCreate
 

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