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id
- Variable in class gui.workSpace.
WorkspaceManager
Identax
- Class in
<Unnamed>
Main Class
Identax()
- Constructor for class
Identax
IDENTAX_VERSION
- Static variable in class gui.
MainFrame
Identifier
- Class in
core
Abstract class Identifier contains common methods for concrete implementations of identifications cores, like Tree or Bayes.
Identifier(Context, Matrix, Configuration)
- Constructor for class core.
Identifier
Creates a new Identifier with no done tests
idTree
- Variable in class gui.matrixLibrary.
DialogTree
idTree
- Variable in class gui.matrixLibrary.
DialogTree.MenuTree
importDate
- Variable in class data.
Matrix
Timestamp of the import moment
Importer
- Class in
data.importers
Data layer manager to import external files.
Importer()
- Constructor for class data.importers.
Importer
ImporterCSV
- Class in
data.importers
Importer for .CSV (comma separated values) files.
ImporterCSV()
- Constructor for class data.importers.
ImporterCSV
ImporterCSV.MatrixFileFilterCSV
- Class in
data.importers
A kind of FileFilter that accept .CSV filetypes
ImporterCSV.MatrixFileFilterCSV()
- Constructor for class data.importers.
ImporterCSV.MatrixFileFilterCSV
ImporterIMAT
- Class in
data.importers
Handler for .IMAT (this program) files.
ImporterIMAT()
- Constructor for class data.importers.
ImporterIMAT
ImporterIMAT.MatrixFileFilterIMAT
- Class in
data.importers
A kind of FileFilter that accept .IMAT filetypes
ImporterIMAT.MatrixFileFilterIMAT()
- Constructor for class data.importers.
ImporterIMAT.MatrixFileFilterIMAT
ImporterMAT
- Class in
data.importers
Handler for import .MAT (old Bacterial Identifier) files.
ImporterMAT()
- Constructor for class data.importers.
ImporterMAT
ImporterMAT.MatrixFileFilterMAT
- Class in
data.importers
A kind of FileFilter that accept .MAT filetypes
ImporterMAT.MatrixFileFilterMAT()
- Constructor for class data.importers.
ImporterMAT.MatrixFileFilterMAT
ImporterXLS
- Class in
data.importers
Importer for .XLS (excel 97-2003) files.
ImporterXLS()
- Constructor for class data.importers.
ImporterXLS
ImporterXLS.MatrixFileFilterXLS
- Class in
data.importers
A kind of FileFilter that accept .XLS filetypes
ImporterXLS.MatrixFileFilterXLS()
- Constructor for class data.importers.
ImporterXLS.MatrixFileFilterXLS
importFile(File)
- Static method in class data.importers.
ImporterCSV
Parses the data and put it in the new Matrix object
importFile(File)
- Static method in class data.importers.
ImporterIMAT
Parses the data and put it in the new Matrix object
importFile(File)
- Static method in class data.importers.
ImporterMAT
Parses the data and put it in the new Matrix object
importFile(File)
- Static method in class data.importers.
ImporterXLS
Parses the data and put it in the new Matrix object
importMatrix(File)
- Static method in class data.importers.
Importer
This function reads the given file and parse the data in it if applicable.
ImportMatrixManager
- Class in
gui.matrixLibrary
ImportMatrixManager()
- Constructor for class gui.matrixLibrary.
ImportMatrixManager
index
- Variable in class data.
IndexedItem
Index (key) id
IndexedItem
- Class in
data
Basic class to work with array keys (indexes).
IndexedItem(int, float)
- Constructor for class data.
IndexedItem
IndexedItem(int, float, float)
- Constructor for class data.
IndexedItem
indexesOf(boolean[], boolean)
- Static method in class utils.
ArrayUtils
Return an array with the indexes of the given array that have the value given or null if nothing is found
indexesOf(int[], int)
- Static method in class utils.
ArrayUtils
Return an array with the indexes of the given array that have the value given or null if nothing is found
indexId
- Variable in class data.
TreeNode
Key or index of the contained item (taxa or test)
info
- Variable in class data.
Matrix
General Text info about matrix entered by user
info
- Variable in class data.
Workspace
The information about the workspace.
initPanel(JPanel, JTable, String)
- Method in class gui.workSpace.
PanelWSShowInfo
initTable(JTable)
- Method in class gui.workSpace.
PanelWSShowInfo
insertUpdate(DocumentEvent)
- Method in class gui.matrixLibrary.
PanelLibrary
insertUpdate(DocumentEvent)
- Method in class gui.myWindows.
PanelMatrixInfo
isCellEditable(int, int)
- Method in class gui.myClasses.
NonEditTableModel
isFinal()
- Method in class data.
TreeNode
Says if a TreeNode has no sons.
isFoundOnce
- Variable in class gui.workSpace.
PanelWSMain
isNumber(String)
- Static method in class utils.
DataUtils
Returns if the given String is composed only by numbers
isOverwriteRisk()
- Method in class gui.matrixLibrary.
DialogMatrixImport
isSeparator(int, int, int)
- Method in class core.
Identifier
Returns true if a given pair of taxa are separated one from the other by the specified test
isUTF8(InputStream)
- Static method in class utils.
TestEncoding
Detecta si el flujo de datos indicado es UTF-8.
itemStateChanged(ItemEvent)
- Method in class gui.myClasses.
CellEditorRadioButton
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