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java.lang.Objectdata.Configuration
public class Configuration
Class to mantain the core configuration.
Field Summary | |
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private int |
bestScoredCount
This number indicates the number of taxa that has to be considered on the best scored taxa list and unexpected list |
private float |
foundValue
Minimum value to fire the Identified panel |
private float |
minUnexpectedScore
Minimum score to show the taxon at the unexpected results list |
(package private) static long |
serialVersionUID
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private float |
SignalScoreLimitLow
When determining if a test positive, negative or variable, there are two cut points. |
private float |
SignalScoreLimitUpp
When determining if a test is positive, negative or variable, there are two cut points. |
private float |
ZeroSkipValue
To avoid lose information, change 0.00f prob. for this value |
Constructor Summary | |
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Configuration()
Default constructor wich loads Bayesian id. default values |
Method Summary | |
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int |
getBestScoredCount()
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float |
getFoundValue()
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float |
getMinAliveScore()
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float |
getSignalScoreLimitLow()
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float |
getSignalScoreLimitUpp()
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float |
getZeroSkipValue()
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void |
setBestScoredCount(int bestScoredCount)
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void |
setFoundValue(float foundValue)
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void |
setMinUnexpectedScore(float minAliveScore)
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void |
setSignalScoreLimitLow(float signalScoreLimitLow)
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void |
setSignalScoreLimitUpp(float signalScoreLimitUpp)
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void |
setUpBayesDefaults()
Set the current Configuration to use Bayesian Id. defaults |
void |
setUpTreeDefaults()
Set the current Configuration to use Tree Id. defaults |
void |
setZeroSkipValue(float zeroSkipValue)
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Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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static final long serialVersionUID
private float ZeroSkipValue
private float minUnexpectedScore
private float SignalScoreLimitUpp
private float SignalScoreLimitLow
private float foundValue
private int bestScoredCount
Constructor Detail |
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public Configuration()
Method Detail |
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public void setUpBayesDefaults()
public void setUpTreeDefaults()
public float getMinAliveScore()
public float getSignalScoreLimitLow()
public float getSignalScoreLimitUpp()
public float getZeroSkipValue()
public void setMinUnexpectedScore(float minAliveScore)
minAliveScore
- Minimum taxon absolute probability before discard itpublic void setSignalScoreLimitLow(float signalScoreLimitLow)
signalScoreLimitLow
- Lower limit of variable resultspublic void setSignalScoreLimitUpp(float signalScoreLimitUpp)
signalScoreLimitUpp
- Upper limit of variable resultspublic void setZeroSkipValue(float zeroSkipValue)
zeroSkipValue
- Value of a zero if skippedpublic float getFoundValue()
public void setFoundValue(float foundValue)
foundValue
- Minimum relative probability before achieve a identificationpublic int getBestScoredCount()
public void setBestScoredCount(int bestScoredCount)
bestScoredCount
- Number of taxa to analyze looking for unexpected values
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